Sanquiche, Angel; Ortiz-Zuazaga, Humberto (2017): Bioinformatics: Some assembly required. figshare. https://dx.doi.org/10.6084/m9.figshare.4551175.v1 Retrieved: 18 41, Jan 13, 2017 (GMT)

Baez, Walter; Ortiz-Zuazaga, Humberto (2017): Genomic Comparison Across the Species Red Snappers. figshare. https://dx.doi.org/10.6084/m9.figshare.4550431.v1 Retrieved: 18 07, Jan 13, 2017 (GMT)

Fall 2016

Here's the schedule of journal club presentations for this semester.

Short Bio:

Greetings, my name is David John Ortiz Rivera. I was born one august day in Bayamon, Puerto Rico, but raised in Morovis. Currently a 4th year undergrad student at the University of Puerto Rico, Rio Piedras. I'm primarily interested in programming, video games, music, films, and science (somewhat …

Introduction

I will review the software tool article:

Crusoe MR, Alameldin HF, Awad S et al. The khmer software package: enabling efficient nucleotide sequence analysis [version 1; referees: 2 approved, 1 approved with reservations]. F1000Research 2015, 4:900 (doi: 10.12688/f1000research.6924.1)

I love this paper for several …

Iván L Jiménez Ruiz and Humberto Ortiz-Zuazaga (2016): Evaluating Quantification and Expression methods with Drosophila melanogaster data. Technical report available online.

Introduction

Samples of DNA/RNA known as sequences can be used to understand the information of nucleotides in biological structures. Small fragments known as reads are produced from DNA by a DNA Sequencer. In the process of sequence assembly these fragments can be joined in order to reconstruct a complete …