Spring 2023

We're meeting Mondays at 11:30 AM as schedules permit. Here's the schedule of journal club presentations for this semester.

Papers

sparser

The rise of …

March 3

I will review the article:

Lakhina, A., Crovella, M., & Diot, C. (2004, October). Characterization of network-wide anomalies in traffic flows. In Proceedings of the 4th ACM SIGCOMM conference on Internet measurement (pp. 201-206).

Slides

Spring 2022

We're meeting Wednesdays at 3:00 PM online (see your google calendar). Here's the schedule of journal club presentations for this semester.

Papers

seagrass

"Exploring the microbiome of seagrass species …

Fall 2019

We're meeting Fridays at 10:00 AM in the lab. Here's the schedule of journal club presentations for this semester.

Review: Locality sensitive hashing for the edit distance

I'm reviewing some of the findings from the preprint:

Locality sensitive hashing for the edit distance Guillaume Marcais, Dan DeBlasio, Prashant Pandey, Carl Kingsford bioRxiv 534446; doi: https://doi.org/10.1101/534446

Problem

Determine if two sequences overlap.

Existing solutions

Locality …

Spring 2019

We're meeting Fridays at 9:00 AM in the lab. Here's the schedule of journal club presentations for this semester.

Spring 2017

We're meeting Tuesdays at 10:00 AM in the lab. Here's the schedule of journal club presentations for this semester.

Fall 2016

Here's the schedule of journal club presentations for this semester.

Introduction

I will review the software tool article:

Crusoe MR, Alameldin HF, Awad S et al. The khmer software package: enabling efficient nucleotide sequence analysis [version 1; referees: 2 approved, 1 approved with reservations]. F1000Research 2015, 4:900 (doi: 10.12688/f1000research.6924.1)

I love this paper for several …