Journal club: schedule for Fall 2023

Spring 2023

We're meeting Mondays at 11:30 AM as schedules permit. Here's the schedule of journal club presentations for this semester.

Date Person Paper
Aug 28 Dharsy sparser
Sep 8 Juan binarized
Sep 11 Miguel noise
Sep 18 Ian specious
Sep 25 Ricardo stringtie

Papers

sparser
The rise of …
more ...


Journal club: schedule for Spring 2022

Spring 2022

We're meeting Wednesdays at 3:00 PM online (see your google calendar). Here's the schedule of journal club presentations for this semester.

Date Person Paper
Feb 23 Diego Perez seagrass
Mar 3 Humberto Ortiz anomalies
Mar 9 Mary Torres YPLL

Papers

seagrass
"Exploring the microbiome of seagrass species …
more ...

Journal club: schedule for Fall 2019

Fall 2019

We're meeting Fridays at 10:00 AM in the lab. Here's the schedule of journal club presentations for this semester.

Date Person Paper
Aug 30 Roberto Herrera DeNovo Congenital Heart Disease
Sep 6 No meeting
Sep 13 Briknie Baez Deepfinder
Sep 20 Luis Mieses Gene experession
Sep 27 …
more ...

Order MinHash

Review: Locality sensitive hashing for the edit distance

I'm reviewing some of the findings from the preprint:

Locality sensitive hashing for the edit distance Guillaume Marcais, Dan DeBlasio, Prashant Pandey, Carl Kingsford bioRxiv 534446; doi: https://doi.org/10.1101/534446

Problem

Determine if two sequences overlap.

Existing solutions

Locality …

more ...

Journal club: schedule for Spring 2019

Spring 2019

We're meeting Fridays at 9:00 AM in the lab. Here's the schedule of journal club presentations for this semester.

Date Person Paper
Feb 8 Angel Sanquiche Axolotl
Feb 15 cancelled
Feb 22 Louis Gil / Roberto Lopez Oshlack / Streams
Mar 1 Israel Dilan Next-gen Sequence Assembly
Mar 8 …
more ...

Journal club: schedule for Spring 2017

Spring 2017

We're meeting Tuesdays at 10:00 AM in the lab. Here's the schedule of journal club presentations for this semester.

Date Person Paper
Feb 14 Kevin Legarreta The Lair
Feb 21 Angel Sanquiche diginorm
Feb 28 David Ortiz salmon
Mar 7 Ivan Jimenez Huang et al
Mar 14 …
more ...

Journal club: schedule for Fall 2016

Fall 2016

Here's the schedule of journal club presentations for this semester.

Date Person Paper
Sep 2 Humberto Ortiz-Zuazaga khmer
Sep 9 Grace Rodriguez Anomalies in IPv6 (poster)
Sep 16 Walter Baez stacks
Sep 23 Travel to Washington DC
Sep 30 Posponed
Oct 7 David Ortiz edgeR
Oct 14 Christopher …
more ...