MegaProbe Lab Spring 2026
We're meeting Mondays at 1:30 PM in the lab or online (see your google calendar). Here's the schedule of journal club presentations for this semester.
| Date | Person | Paper |
|---|---|---|
| Mar 2 | Miguel Hernandez | DeepMAPS |
| Mar 9 | Rafael Rios | Accelerating |
| Mar 16 | Isaac Lopez | Algebraic |
| Mar 23 | Mario Hernandez | pangenome |
Papers
- DeepMAPS
- Ma, A. et al. Single-cell biological network inference using a heterogeneous graph transformer. Nat Commun 14, 964 (2023).
- Accelerating
- Accelerating single-cell genomic analysis with GPUs Corey Nolet, Avantika Lal, Rajesh Ilango, Taurean Dyer, Rajiv Movva, John Zedlewski, Johnny Israeli bioRxiv 2022.05.26.493607; doi: https://doi.org/10.1101/2022.05.26.493607
- Algebraic
- Edwin Brady. 2013. Programming and reasoning with algebraic effects and dependent types. In Proceedings of the 18th ACM SIGPLAN international conference on Functional programming (ICFP '13). Association for Computing Machinery, New York, NY, USA, 133–144.
- pangenome
- RLBWT-Based LCP Computation in Compressed Space for Terabase-Scale Pangenome Analysis Ahsan Sanaullah, Nathaniel K. Brown, Pramesh Shakya, Arun Deegutla, Ardalan Naseri, Ben Langmead, Degui Zhi, Shaojie Zhang bioRxiv 2026.01.23.701410; doi: https://doi.org/10.64898/2026.01.23.701410