Omar Rosado Ramírez

Bio:

Full-time problem solver and computer science student.

Contact info:

• e-mail: omar.rosado1@upr.edu
• Github: https://github.com/afrotonder

Research Goals

Learn some more python and submit at least 3 pull requests to the Kevlar project by the end of the semester.

Weekly UPDATES

WEEK 16 …

Introduction

I will review the software tool article:

Crusoe MR, Alameldin HF, Awad S et al. The khmer software package: enabling efficient nucleotide sequence analysis [version 1; referees: 2 approved, 1 approved with reservations]. F1000Research 2015, 4:900 (doi: 10.12688/f1000research.6924.1)

I love this paper for several …

Israel O. Dilán Pantojas and Humberto Ortiz-Zuazaga (2016): Analysis of Mutual’s output and some contributions. Technical report available online.

Introduction

Samples of DNA/RNA known as sequences can be used to understand the information of nucleotides in biological structures. Small fragments known as reads are produced from DNA by a DNA Sequencer. In the process of sequence assembly these fragments can be joined in order to reconstruct a complete …

Torres, Ricardo Augusto López; Ortiz-Zuazaga, Humberto (2015): Error detection in de-novo sequence assembly. figshare. http://dx.doi.org/10.6084/m9.figshare.1431146 Retrieved 12:54, May 30, 2015 (GMT)

Rosado-Ramirez, Omar; Ortiz-Zuazaga, Humberto (2015): Rethinking Sequence Assembly. figshare. http://dx.doi.org/10.6084/m9.figshare.1425159 Retrieved 21:13, May 26, 2015 (GMT)

Omar Rosado-Ramírez (2015): CopperHead: A New And Simple Solution To Sequence Assembly. Poster presented for Undergraduate Seminar (CCOM 3982), May 11, San Juan, PR. pdf Retrieved 21:06, May 26, 2015 (GMT)

Hello!

I am currently graduating from my B.S. of Computer Science, with a second concentration on Math. My research with Dr. Ortiz revolves around the open source project NetworkX, which is third party library for complex networks (graphs). I also worked as a tutor in the Computer Science courses …

Rivera-Hazim, Edwardo S.; Ortiz-Zuazaga, Humberto (2015): A general implementation of Eulerian path. figshare. http://dx.doi.org/10.6084/m9.figshare.1424492 Retrieved 00:18, May 24, 2015 (GMT)

Humberto Ortiz-Zuazaga, PhD

Director of the MegaProbe Lab. Completed a PhD in the analysis of microarrays under the supervision of Dr. Oscar Moreno de Ayala.

A lot more information is available on his home page.

2016/01/22 - Accepted 8 students. Planned some projects. Meetings.